Mac setup †

Below I describe how to setup my Mac (what I do when I setup a new Macintosh).

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Initialization †

After backing up the data using TimeMachine or alike, initialize the data by starting with the safe boot mode (press command+r when startup your Mac), we initialize Mac, and reinstall OS (and then update).

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Microsoft Office †

Login to My Handai site (https://my.osaka-u.ac.jp) using your Osaka University ID, find "Other service" and "Microsoft software. Download Office 2019 for Mac and install.
NOTE: "My Handai" is available only in Japanese, and please ask your colleagues who understand Japanese. Note also the short-term students are NOT allowed to download and install MS softwares provided through "my handai" site. Please ask your supervisor to install on behalf.

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XCode †

Install from AppleStore (may take an hour or so).

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Homebrew †

Use Homebrew to install commands necessary for the research. Follow the description in the Homebrew webpage and execute the following on your terminal as:

/usr/bin/ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"

(check the command in the original webpage)
After finishing Homebrew, install the following commands (at least) as:

  • XQuartz 
    $ brew cask install xquartz
  • gcc 
    $ brew install gcc
  • open-mpi 
    $ brew install open-mpi
  • gnuplot 
    $ brew install gnuplot
  • LaTeX
    Download MacTeX.pkg from this page and install it.
  • TeXworks
    In case you want use TeXworks to edit LaTeX files, type 
    $ brew cask install texworks
  • Python3 Search package by issuing 
    $ brew search python3
    and follow the instruction.
  • VESTA Download from the VESTA webpage, unpack the package and copy "VESTA" folder to the Application folder
  • VMD (useful to visualize the trajectory) Download from the offical site. Registration required.
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